Commit Graph

25 Commits

Author SHA1 Message Date
Beehive Innovations
c960bcb720 Add DocGen tool with comprehensive documentation generation capabilities (#109)
* WIP: new workflow architecture

* WIP: further improvements and cleanup

* WIP: cleanup and docks, replace old tool with new

* WIP: cleanup and docks, replace old tool with new

* WIP: new planner implementation using workflow

* WIP: precommit tool working as a workflow instead of a basic tool
Support for passing False to use_assistant_model to skip external models completely and use Claude only

* WIP: precommit workflow version swapped with old

* WIP: codereview

* WIP: replaced codereview

* WIP: replaced codereview

* WIP: replaced refactor

* WIP: workflow for thinkdeep

* WIP: ensure files get embedded correctly

* WIP: thinkdeep replaced with workflow version

* WIP: improved messaging when an external model's response is received

* WIP: analyze tool swapped

* WIP: updated tests
* Extract only the content when building history
* Use "relevant_files" for workflow tools only

* WIP: updated tests
* Extract only the content when building history
* Use "relevant_files" for workflow tools only

* WIP: fixed get_completion_next_steps_message missing param

* Fixed tests
Request for files consistently

* Fixed tests
Request for files consistently

* Fixed tests

* New testgen workflow tool
Updated docs

* Swap testgen workflow

* Fix CI test failures by excluding API-dependent tests

- Update GitHub Actions workflow to exclude simulation tests that require API keys
- Fix collaboration tests to properly mock workflow tool expert analysis calls
- Update test assertions to handle new workflow tool response format
- Ensure unit tests run without external API dependencies in CI

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* WIP - Update tests to match new tools

* WIP - Update tests to match new tools

* WIP - Update tests to match new tools

* Should help with https://github.com/BeehiveInnovations/zen-mcp-server/issues/97
Clear python cache when running script: https://github.com/BeehiveInnovations/zen-mcp-server/issues/96
Improved retry error logging
Cleanup

* WIP - chat tool using new architecture and improved code sharing

* Removed todo

* Removed todo

* Cleanup old name

* Tweak wordings

* Tweak wordings
Migrate old tests

* Support for Flash 2.0 and Flash Lite 2.0

* Support for Flash 2.0 and Flash Lite 2.0

* Support for Flash 2.0 and Flash Lite 2.0
Fixed test

* Improved consensus to use the workflow base class

* Improved consensus to use the workflow base class

* Allow images

* Allow images

* Replaced old consensus tool

* Cleanup tests

* Tests for prompt size

* New tool: docgen
Tests for prompt size
Fixes: https://github.com/BeehiveInnovations/zen-mcp-server/issues/107
Use available token size limits: https://github.com/BeehiveInnovations/zen-mcp-server/issues/105

* Improved docgen prompt
Exclude TestGen from pytest inclusion

* Updated errors

* Lint

* DocGen instructed not to fix bugs, surface them and stick to d

* WIP

* Stop claude from being lazy and only documenting a small handful

* More style rules

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-06-22 10:21:19 +04:00
Fahad
d0da6ce9e4 Gemini model rename 2025-06-19 05:37:40 +04:00
Fahad
5a49d196c8 More integration tests 2025-06-16 07:07:38 +04:00
Fahad
c643970ffb Fixed integration test for auto mode 2025-06-16 06:57:06 +04:00
Fahad
903aabd311 Fixed imports and lint 2025-06-16 06:24:33 +04:00
Fahad
2cfe0b163a Fix all failing tests and pytest collection warnings
Fixed MagicMock comparison errors across multiple test suites by:
- Adding proper ModelCapabilities mocks with real values instead of MagicMock objects
- Updating test_auto_mode.py with correct provider mocking for model availability tests
- Updating test_thinking_modes.py with proper capabilities mocking in all thinking mode tests
- Updating test_tools.py with proper capabilities mocking for CodeReview and Analyze tools
- Fixing test_large_prompt_handling.py by adding proper provider mocking to prevent errors before large prompt detection

Fixed pytest collection warnings by:
- Renaming TestGenRequest to TestGenerationRequest to avoid pytest collecting it as a test class
- Renaming TestGenTool to TestGenerationTool to avoid pytest collecting it as a test class
- Updated all imports and references across server.py, tools/__init__.py, and test files

All 459 tests now pass without warnings or MagicMock comparison errors.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-16 06:02:12 +04:00
Fahad
fb69ebebe4 Lint 2025-06-13 16:13:02 +04:00
Fahad
048ebf90bf Cleanup 2025-06-13 16:05:21 +04:00
Fahad
22093bbf18 Fixed tests 2025-06-12 21:00:53 +04:00
Fahad
3aedb16101 Use the new Gemini 2.5 Flash
Updated to support Thinking Tokens as a ratio of the max allowed
Updated tests
Updated README
2025-06-12 20:46:54 +04:00
Fahad
79af2654b9 Use the new flash model
Updated tests
2025-06-12 13:44:09 +04:00
Fahad
7462599ddb Simplified thread continuations
Fixed and improved tests
2025-06-12 12:47:02 +04:00
Fahad
fb66825bf6 Rebranding, refactoring, renaming, cleanup, updated docs 2025-06-12 10:40:43 +04:00
Fahad
2a067a7f4e WIP major refactor and features 2025-06-12 07:14:59 +04:00
Fahad
94f542c76a fix: critical conversation history bug and improve Docker integration
This commit addresses several critical issues and improvements:

🔧 Critical Fixes:
- Fixed conversation history not being included when using continuation_id in AI-to-AI conversations
- Fixed test mock targeting issues preventing proper conversation memory validation
- Fixed Docker debug logging functionality with Gemini tools

🐛 Bug Fixes:
- Docker compose configuration for proper container command execution
- Test mock import targeting from utils.conversation_memory.* to tools.base.*
- Version bump to 3.1.0 reflecting significant improvements

🚀 Improvements:
- Enhanced Docker environment configuration with comprehensive logging setup
- Added cross-tool continuation documentation and examples in README
- Improved error handling and validation across all tools
- Better logging configuration with LOG_LEVEL environment variable support
- Enhanced conversation memory system documentation

🧪 Testing:
- Added comprehensive conversation history bug fix tests
- Added cross-tool continuation functionality tests
- All 132 tests now pass with proper conversation history validation
- Improved test coverage for AI-to-AI conversation threading

 Code Quality:
- Applied black, isort, and ruff formatting across entire codebase
- Enhanced inline documentation for conversation memory system
- Cleaned up temporary files and improved repository hygiene
- Better test descriptions and coverage for critical functionality

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-11 08:53:45 +04:00
Fahad
14ccbede43 Fixes https://github.com/BeehiveInnovations/gemini-mcp-server/issues/6 2025-06-11 07:09:28 +04:00
Fahad
ba8f7192c3 refactor: rename think_deeper to thinkdeep for brevity
- Renamed `think_deeper` tool to `thinkdeep` for shorter, cleaner naming
- Updated all imports from ThinkDeeperTool to ThinkDeepTool
- Updated all references from THINK_DEEPER_PROMPT to THINKDEEP_PROMPT
- Updated tool registration in server.py
- Updated all test files to use new naming convention
- Updated README documentation to reflect new tool names
- All functionality remains the same, only naming has changed

This completes the tool renaming refactor for improved clarity and consistency.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 12:38:38 +04:00
Fahad
5f8ed3aae8 refactor: rename review tools for clarity and consistency
- Renamed `review_code` tool to `codereview` for better naming convention
- Renamed `review_changes` tool to `precommit` to better reflect its purpose
- Updated all tool descriptions to remove "Triggers:" sections and improve clarity
- Updated all imports and references throughout the codebase
- Renamed test files to match new tool names
- Updated server.py tool registrations
- All existing functionality preserved with improved naming

This refactoring improves code organization and makes tool purposes clearer.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 12:30:06 +04:00
Fahad
67f18ef3c9 refactor: rename debug_issue tool to debug for brevity
- Rename debug_issue.py to debug.py
- Update tool name from 'debug_issue' to 'debug' throughout codebase
- Update all references in server.py, tests, and README
- Keep DebugIssueTool class name for backward compatibility
- All tests pass with the renamed tool

This makes the tool name shorter and more consistent with other
tool names like 'chat' and 'analyze'. The functionality remains
exactly the same.

🤖 Generated with Claude Code

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 11:43:47 +04:00
Fahad
27add4d05d feat: Major refactoring and improvements v2.11.0
## 🚀 Major Improvements

### Docker Environment Simplification
- **BREAKING**: Simplified Docker configuration by auto-detecting sandbox from WORKSPACE_ROOT
- Removed redundant MCP_PROJECT_ROOT requirement for Docker setups
- Updated all Docker config examples and setup scripts
- Added security validation for dangerous WORKSPACE_ROOT paths

### Security Enhancements
- **CRITICAL**: Fixed insecure PROJECT_ROOT fallback to use current directory instead of home
- Enhanced path validation with proper Docker environment detection
- Removed information disclosure in error messages
- Strengthened symlink and path traversal protection

### File Handling Optimization
- **PERFORMANCE**: Optimized read_files() to return content only (removed summary)
- Unified file reading across all tools using standardized file_utils routines
- Fixed review_changes tool to use consistent file loading patterns
- Improved token management and reduced unnecessary processing

### Tool Improvements
- **UX**: Enhanced ReviewCodeTool to require user context for targeted reviews
- Removed deprecated _get_secure_container_path function and _sanitize_filename
- Standardized file access patterns across analyze, review_changes, and other tools
- Added contextual prompting to align reviews with user expectations

### Code Quality & Testing
- Updated all tests for new function signatures and requirements
- Added comprehensive Docker path integration tests
- Achieved 100% test coverage (95 tests passing)
- Full compliance with ruff, black, and isort linting standards

### Configuration & Deployment
- Added pyproject.toml for modern Python packaging
- Streamlined Docker setup removing redundant environment variables
- Updated setup scripts across all platforms (Windows, macOS, Linux)
- Improved error handling and validation throughout

## 🔧 Technical Changes

- **Removed**: `_get_secure_container_path()`, `_sanitize_filename()`, unused SANDBOX_MODE
- **Enhanced**: Path translation, security validation, token management
- **Standardized**: File reading patterns, error handling, Docker detection
- **Updated**: All tool prompts for better context alignment

## 🛡️ Security Notes

This release significantly improves the security posture by:
- Eliminating broad filesystem access defaults
- Adding validation for Docker environment variables
- Removing information disclosure in error paths
- Strengthening path traversal and symlink protections

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 09:50:05 +04:00
Fahad
7ea790ef88 fix: Docker path translation for review_changes and code deduplication
- Fixed review_changes tool to properly translate host paths to container paths in Docker
- Prevents "No such file or directory" errors when running in Docker containers
- Added proper error handling with clear messages when paths are inaccessible

refactor: Centralized token limit validation across all tools
- Added _validate_token_limit method to BaseTool to eliminate code duplication
- Reduced ~25 lines of duplicated code across 5 tools (analyze, chat, debug_issue, review_code, think_deeper)
- Maintains exact same error messages and behavior

feat: Enhanced large prompt handling
- Added support for prompts >50K chars by requesting file-based input
- Preserves MCP's ~25K token capacity for responses
- All tools now check prompt size before processing

test: Added comprehensive Docker path integration tests
- Tests for path translation, security validation, and error handling
- Tests for review_changes tool specifically with Docker paths
- Fixed failing think_deeper test (updated default from "max" to "high")

chore: Code quality improvements
- Applied black formatting across all files
- Fixed import sorting with isort
- All tests passing (96 tests)
- Standardized error handling follows MCP TextContent format

The changes ensure consistent behavior across all environments while reducing code duplication and improving maintainability.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 07:20:24 +04:00
Fahad
7ee610938b feat: add review_pending_changes tool and enforce absolute path security
- Add new review_pending_changes tool for comprehensive pre-commit reviews
- Implement filesystem sandboxing with MCP_PROJECT_ROOT
- Enforce absolute paths for all file/directory operations
- Add comprehensive git utilities for repository management
- Update all tools to use centralized path validation
- Add extensive test coverage for new features and security model
- Update documentation with new tool and path requirements
- Remove obsolete demo and guide files

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-09 12:42:40 +04:00
Fahad
299f7d3897 feat: add Claude-Gemini collaboration and chat capabilities
- Add collaboration demo showing dynamic context requests
- Implement chat tool for general conversations and brainstorming
- Add tool selection guide with clear boundaries
- Introduce models configuration system
- Update prompts for better tool descriptions
- Refactor server to remove redundant functionality
- Add comprehensive tests for collaboration features
- Enhance base tool with collaborative features

This enables Claude to request additional context from Gemini
during tool execution, improving analysis quality and accuracy.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-09 11:17:26 +04:00
Fahad
5ccedcecd8 style: fix linting and formatting issues
- Run black formatter on all Python files
- Fix ruff linting issues:
  - Remove unused imports
  - Remove unused variables
  - Fix f-string without placeholders
- All 37 tests still pass
- Code quality improved for CI/CD compliance

🧹 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-09 09:37:46 +04:00
Fahad
fb5c04ea60 feat: implement comprehensive thinking modes and migrate to google-genai
Major improvements to thinking capabilities and API integration:

- Remove all output token limits for future-proof responses
- Add 5-level thinking mode system: minimal, low, medium, high, max
- Migrate from google-generativeai to google-genai library
- Implement native thinkingBudget support for Gemini 2.5 Pro
- Set medium thinking as default for all tools, max for think_deeper

🧠 Thinking Modes:
- minimal (128 tokens) - simple tasks
- low (2048 tokens) - basic reasoning
- medium (8192 tokens) - default for most tools
- high (16384 tokens) - complex analysis
- max (32768 tokens) - default for think_deeper

🔧 Technical Changes:
- Complete migration to google-genai>=1.19.0
- Remove google-generativeai dependency
- Add ThinkingConfig with thinking_budget parameter
- Update all tools to support thinking_mode parameter
- Comprehensive test suite with 37 passing unit tests
- CI-friendly testing (no API key required for unit tests)
- Live integration tests for API verification

🧪 Testing & CI:
- Add GitHub Actions workflow with multi-Python support
- Unit tests use mocks, no API key required
- Live integration tests optional with API key
- Contributing guide with development setup
- All tests pass without external dependencies

🐛 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-09 09:35:21 +04:00