Commit Graph

18 Commits

Author SHA1 Message Date
Beehive Innovations
c960bcb720 Add DocGen tool with comprehensive documentation generation capabilities (#109)
* WIP: new workflow architecture

* WIP: further improvements and cleanup

* WIP: cleanup and docks, replace old tool with new

* WIP: cleanup and docks, replace old tool with new

* WIP: new planner implementation using workflow

* WIP: precommit tool working as a workflow instead of a basic tool
Support for passing False to use_assistant_model to skip external models completely and use Claude only

* WIP: precommit workflow version swapped with old

* WIP: codereview

* WIP: replaced codereview

* WIP: replaced codereview

* WIP: replaced refactor

* WIP: workflow for thinkdeep

* WIP: ensure files get embedded correctly

* WIP: thinkdeep replaced with workflow version

* WIP: improved messaging when an external model's response is received

* WIP: analyze tool swapped

* WIP: updated tests
* Extract only the content when building history
* Use "relevant_files" for workflow tools only

* WIP: updated tests
* Extract only the content when building history
* Use "relevant_files" for workflow tools only

* WIP: fixed get_completion_next_steps_message missing param

* Fixed tests
Request for files consistently

* Fixed tests
Request for files consistently

* Fixed tests

* New testgen workflow tool
Updated docs

* Swap testgen workflow

* Fix CI test failures by excluding API-dependent tests

- Update GitHub Actions workflow to exclude simulation tests that require API keys
- Fix collaboration tests to properly mock workflow tool expert analysis calls
- Update test assertions to handle new workflow tool response format
- Ensure unit tests run without external API dependencies in CI

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* WIP - Update tests to match new tools

* WIP - Update tests to match new tools

* WIP - Update tests to match new tools

* Should help with https://github.com/BeehiveInnovations/zen-mcp-server/issues/97
Clear python cache when running script: https://github.com/BeehiveInnovations/zen-mcp-server/issues/96
Improved retry error logging
Cleanup

* WIP - chat tool using new architecture and improved code sharing

* Removed todo

* Removed todo

* Cleanup old name

* Tweak wordings

* Tweak wordings
Migrate old tests

* Support for Flash 2.0 and Flash Lite 2.0

* Support for Flash 2.0 and Flash Lite 2.0

* Support for Flash 2.0 and Flash Lite 2.0
Fixed test

* Improved consensus to use the workflow base class

* Improved consensus to use the workflow base class

* Allow images

* Allow images

* Replaced old consensus tool

* Cleanup tests

* Tests for prompt size

* New tool: docgen
Tests for prompt size
Fixes: https://github.com/BeehiveInnovations/zen-mcp-server/issues/107
Use available token size limits: https://github.com/BeehiveInnovations/zen-mcp-server/issues/105

* Improved docgen prompt
Exclude TestGen from pytest inclusion

* Updated errors

* Lint

* DocGen instructed not to fix bugs, surface them and stick to d

* WIP

* Stop claude from being lazy and only documenting a small handful

* More style rules

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-06-22 10:21:19 +04:00
Beehive Innovations
4151c3c3a5 Migration from Docker to Standalone Python Server (#73)
* Migration from docker to standalone server
Migration handling
Fixed tests
Use simpler in-memory storage
Support for concurrent logging to disk
Simplified direct connections to localhost

* Migration from docker / redis to standalone script
Updated tests
Updated run script
Fixed requirements
Use dotenv
Ask if user would like to install MCP in Claude Desktop once
Updated docs

* More cleanup and references to docker removed

* Cleanup

* Comments

* Fixed tests

* Fix GitHub Actions workflow for standalone Python architecture

- Install requirements-dev.txt for pytest and testing dependencies
- Remove Docker setup from simulation tests (now standalone)
- Simplify linting job to use requirements-dev.txt
- Update simulation tests to run directly without Docker

Fixes unit test failures in CI due to missing pytest dependency.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Remove simulation tests from GitHub Actions

- Removed simulation-tests job that makes real API calls
- Keep only unit tests (mocked, no API costs) and linting
- Simulation tests should be run manually with real API keys
- Reduces CI costs and complexity

GitHub Actions now only runs:
- Unit tests (569 tests, all mocked)
- Code quality checks (ruff, black)

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Fixed tests

* Fixed tests

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-06-18 23:41:22 +04:00
Fahad
3667ed3a43 Steer the LLMs away from being overtly assertive in trying to discover non-existent bugs during a debug investigation session
Add a no_bug_found response
2025-06-17 17:01:46 +04:00
Fahad
044a8621a3 Vastly improved debug tool and related instructions
Accompanying simulation test
Cleanup - A single source of truth for parameter descriptions
2025-06-17 16:23:26 +04:00
Fahad
91077e3810 Performance improvements when embedding files:
- Exit early at MCP boundary if files won't fit within given context of chosen model
- Encourage claude to re-run with better context
- Check file sizes before embedding
- Drop files from older conversations when building continuations and give priority to newer files
- List and mention excluded files to Claude on return
- Improved tests
- Improved precommit prompt
- Added a new Low severity to precommit
- Improved documentation of file embedding strategy
- Refactor
2025-06-16 05:51:52 +04:00
Fahad
86728a1442 WIP 2025-06-15 15:32:41 +04:00
Fahad
4becd70a82 Perform prompt size checks only at the MCP boundary
New test to confirm history build-up and system prompt does not affect prompt size checks
Also check for large prompts in focus_on
Fixed .env.example incorrectly did not comment out CUSTOM_API causing the run-server script to think at least one key exists
2025-06-15 10:37:08 +04:00
Fahad
c7835e7eef Easier access to logs at startup with -f on the run script
Improved prompt for immediate action
Additional logging of tool names
Updated documentation
Context aware decomposition system prompt
New script to run code quality checks
2025-06-15 09:25:52 +04:00
Fahad
b5004b91fc Major new addition: refactor tool
Supports decomposing large components and files, finding codesmells, finding modernizing opportunities as well as code organization opportunities. Fix this mega-classes today!
Line numbers added to embedded code for better references from model -> claude
2025-06-15 06:00:01 +04:00
Fahad
442decba70 Improved model response handling to handle additional response statuses in future
Improved testgen; encourages follow-ups with less work in between and less token generation to avoid surpassing the 25K barrier
Improved coderevew tool to request a focused code review instead where a single-pass code review is too large or complex
2025-06-14 18:43:56 +04:00
Fahad
eb388ab2f2 Categorize tools into 'model capabilities categories' to help determine which type of model to pick when in auto mode
Encourage Claude to pick the best model for the job automatically in auto mode
Lots of new tests to ensure automatic model picking works reliably based on user preference or when a matching model is not found or ambiguous
Improved error reporting when bogus model is requested and is not configured or available
2025-06-14 02:17:06 +04:00
Fahad
8ac5bbb5af Fixed workspace path mapping
Refactoring
Improved system prompts, more generalized
Home folder protection and detection
Retry logic for gemini
2025-06-14 00:26:59 +04:00
Fahad
7462599ddb Simplified thread continuations
Fixed and improved tests
2025-06-12 12:47:02 +04:00
Fahad
94f542c76a fix: critical conversation history bug and improve Docker integration
This commit addresses several critical issues and improvements:

🔧 Critical Fixes:
- Fixed conversation history not being included when using continuation_id in AI-to-AI conversations
- Fixed test mock targeting issues preventing proper conversation memory validation
- Fixed Docker debug logging functionality with Gemini tools

🐛 Bug Fixes:
- Docker compose configuration for proper container command execution
- Test mock import targeting from utils.conversation_memory.* to tools.base.*
- Version bump to 3.1.0 reflecting significant improvements

🚀 Improvements:
- Enhanced Docker environment configuration with comprehensive logging setup
- Added cross-tool continuation documentation and examples in README
- Improved error handling and validation across all tools
- Better logging configuration with LOG_LEVEL environment variable support
- Enhanced conversation memory system documentation

🧪 Testing:
- Added comprehensive conversation history bug fix tests
- Added cross-tool continuation functionality tests
- All 132 tests now pass with proper conversation history validation
- Improved test coverage for AI-to-AI conversation threading

 Code Quality:
- Applied black, isort, and ruff formatting across entire codebase
- Enhanced inline documentation for conversation memory system
- Cleaned up temporary files and improved repository hygiene
- Better test descriptions and coverage for critical functionality

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-11 08:53:45 +04:00
Fahad
f5060367a0 WIP - communication memory 2025-06-10 19:16:51 +04:00
Fahad
27add4d05d feat: Major refactoring and improvements v2.11.0
## 🚀 Major Improvements

### Docker Environment Simplification
- **BREAKING**: Simplified Docker configuration by auto-detecting sandbox from WORKSPACE_ROOT
- Removed redundant MCP_PROJECT_ROOT requirement for Docker setups
- Updated all Docker config examples and setup scripts
- Added security validation for dangerous WORKSPACE_ROOT paths

### Security Enhancements
- **CRITICAL**: Fixed insecure PROJECT_ROOT fallback to use current directory instead of home
- Enhanced path validation with proper Docker environment detection
- Removed information disclosure in error messages
- Strengthened symlink and path traversal protection

### File Handling Optimization
- **PERFORMANCE**: Optimized read_files() to return content only (removed summary)
- Unified file reading across all tools using standardized file_utils routines
- Fixed review_changes tool to use consistent file loading patterns
- Improved token management and reduced unnecessary processing

### Tool Improvements
- **UX**: Enhanced ReviewCodeTool to require user context for targeted reviews
- Removed deprecated _get_secure_container_path function and _sanitize_filename
- Standardized file access patterns across analyze, review_changes, and other tools
- Added contextual prompting to align reviews with user expectations

### Code Quality & Testing
- Updated all tests for new function signatures and requirements
- Added comprehensive Docker path integration tests
- Achieved 100% test coverage (95 tests passing)
- Full compliance with ruff, black, and isort linting standards

### Configuration & Deployment
- Added pyproject.toml for modern Python packaging
- Streamlined Docker setup removing redundant environment variables
- Updated setup scripts across all platforms (Windows, macOS, Linux)
- Improved error handling and validation throughout

## 🔧 Technical Changes

- **Removed**: `_get_secure_container_path()`, `_sanitize_filename()`, unused SANDBOX_MODE
- **Enhanced**: Path translation, security validation, token management
- **Standardized**: File reading patterns, error handling, Docker detection
- **Updated**: All tool prompts for better context alignment

## 🛡️ Security Notes

This release significantly improves the security posture by:
- Eliminating broad filesystem access defaults
- Adding validation for Docker environment variables
- Removing information disclosure in error paths
- Strengthening path traversal and symlink protections

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 09:50:05 +04:00
Fahad
7ea790ef88 fix: Docker path translation for review_changes and code deduplication
- Fixed review_changes tool to properly translate host paths to container paths in Docker
- Prevents "No such file or directory" errors when running in Docker containers
- Added proper error handling with clear messages when paths are inaccessible

refactor: Centralized token limit validation across all tools
- Added _validate_token_limit method to BaseTool to eliminate code duplication
- Reduced ~25 lines of duplicated code across 5 tools (analyze, chat, debug_issue, review_code, think_deeper)
- Maintains exact same error messages and behavior

feat: Enhanced large prompt handling
- Added support for prompts >50K chars by requesting file-based input
- Preserves MCP's ~25K token capacity for responses
- All tools now check prompt size before processing

test: Added comprehensive Docker path integration tests
- Tests for path translation, security validation, and error handling
- Tests for review_changes tool specifically with Docker paths
- Fixed failing think_deeper test (updated default from "max" to "high")

chore: Code quality improvements
- Applied black formatting across all files
- Fixed import sorting with isort
- All tests passing (96 tests)
- Standardized error handling follows MCP TextContent format

The changes ensure consistent behavior across all environments while reducing code duplication and improving maintainability.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-10 07:20:24 +04:00
Fahad
299f7d3897 feat: add Claude-Gemini collaboration and chat capabilities
- Add collaboration demo showing dynamic context requests
- Implement chat tool for general conversations and brainstorming
- Add tool selection guide with clear boundaries
- Introduce models configuration system
- Update prompts for better tool descriptions
- Refactor server to remove redundant functionality
- Add comprehensive tests for collaboration features
- Enhance base tool with collaborative features

This enables Claude to request additional context from Gemini
during tool execution, improving analysis quality and accuracy.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-06-09 11:17:26 +04:00