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fix: Address Gemini Code Assist review feedback

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- Repository URL consistency: Updated all references to BeehiveInnovations/zen-mcp-server format
- Documentation clarity: Fixed misleading table headers and improved Docker configuration examples
- File conventions: Added missing final newlines to all files
- Configuration consistency: Clarified API key placeholder format in documentation

Addresses all points raised in PR #17 review by Gemini Code Assist.

🤖 Generated with Claude Code

Co-Authored-By: Claude <noreply@anthropic.com>
This commit is contained in:
Patryk Ciechanski
2025-06-12 15:38:01 +02:00
parent f3cafa80a8
commit e37cb71da2
34 changed files with 106 additions and 78 deletions
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7
docs/README.md
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@@ -53,8 +53,8 @@ This documentation is organized into four main categories to serve different aud
The server provides six specialized tools for different AI collaboration scenarios:
| Tool | Purpose | Best For | Documentation |
|------|---------|----------|---------------|
| Tool | Purpose | Best For | Complexity Level |
|------|---------|----------|------------------|
| **[chat](api/tools/chat.md)** | Quick questions, brainstorming | Immediate answers, idea exploration | Low complexity, fast iteration |
| **[thinkdeep](api/tools/thinkdeep.md)** | Complex analysis, strategic planning | Architecture decisions, system design | High complexity, deep analysis |
| **[analyze](api/tools/analyze.md)** | Code exploration, system understanding | Codebase comprehension, dependency analysis | Medium complexity, systematic exploration |
@@ -158,4 +158,5 @@ To contribute:
---
**Need Help?** Check the [Troubleshooting Guide](user-guides/troubleshooting.md) or explore the specific documentation section for your use case. For development questions, start with the [Contributing Guidelines](contributing/setup.md).
**Need Help?** Check the [Troubleshooting Guide](user-guides/troubleshooting.md) or explore the specific documentation section for your use case. For development questions, start with the [Contributing Guidelines](contributing/setup.md).

2
docs/api/mcp-protocol.md
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@@ -457,4 +457,4 @@ RATE_LIMITS = {
---
This MCP protocol implementation provides a secure, performant, and extensible foundation for AI-assisted development workflows while maintaining compatibility with Claude's expectations and requirements.
This MCP protocol implementation provides a secure, performant, and extensible foundation for AI-assisted development workflows while maintaining compatibility with Claude's expectations and requirements.

3
docs/api/tools/analyze.md
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@@ -580,4 +580,5 @@ The authentication system uses JWT tokens with RSA256 signing:
---
The Analyze Tool serves as your code comprehension partner, providing deep insights into existing systems and enabling informed decision-making for development and modernization efforts.
The Analyze Tool serves as your code comprehension partner, providing deep insights into existing systems and enabling informed decision-making for development and modernization efforts.

3
docs/api/tools/chat.md
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@@ -350,4 +350,5 @@ The **Chat Tool** provides immediate access to Gemini's conversational capabilit
---
The Chat Tool serves as the primary interface for rapid AI collaboration, providing immediate access to Gemini's knowledge while maintaining conversation context and enabling seamless integration with deeper analysis tools.
The Chat Tool serves as the primary interface for rapid AI collaboration, providing immediate access to Gemini's knowledge while maintaining conversation context and enabling seamless integration with deeper analysis tools.

3
docs/api/tools/codereview.md
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@@ -415,4 +415,5 @@ memory.create_entities([{
---
The CodeReview Tool provides systematic, thorough code analysis that integrates seamlessly with development workflows while maintaining high standards for security, performance, and maintainability.
The CodeReview Tool provides systematic, thorough code analysis that integrates seamlessly with development workflows while maintaining high standards for security, performance, and maintainability.

3
docs/api/tools/debug.md
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@@ -405,4 +405,5 @@ Error Context:
---
The Debug Tool provides systematic, expert-level debugging capabilities that can handle complex production issues while maintaining accuracy and providing actionable solutions for rapid incident resolution.
The Debug Tool provides systematic, expert-level debugging capabilities that can handle complex production issues while maintaining accuracy and providing actionable solutions for rapid incident resolution.

3
docs/api/tools/precommit.md
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@@ -446,4 +446,5 @@ memory.create_entities([{
---
The Precommit Tool provides comprehensive, automated quality assurance that integrates seamlessly with development workflows while maintaining high standards for security, performance, and code quality.
The Precommit Tool provides comprehensive, automated quality assurance that integrates seamlessly with development workflows while maintaining high standards for security, performance, and code quality.

3
docs/api/tools/thinkdeep.md
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@@ -473,4 +473,5 @@ Constraints:
---
The ThinkDeep Tool serves as your strategic thinking partner, providing comprehensive analysis and creative problem-solving capabilities for the most challenging technical and architectural decisions.
The ThinkDeep Tool serves as your strategic thinking partner, providing comprehensive analysis and creative problem-solving capabilities for the most challenging technical and architectural decisions.

3
docs/architecture/components.md
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@@ -376,4 +376,5 @@ MAX_CONTEXT_TOKENS = int(os.getenv('MAX_CONTEXT_TOKENS', '1000000'))
---
This component architecture provides a robust foundation for AI collaboration while maintaining security, performance, and extensibility requirements.
This component architecture provides a robust foundation for AI collaboration while maintaining security, performance, and extensibility requirements.

3
docs/architecture/data-flow.md
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@@ -542,4 +542,5 @@ class PerformanceMetrics:
})
```
This comprehensive data flow documentation provides the foundation for understanding how information moves through the Gemini MCP Server, enabling effective debugging, optimization, and extension of the system.
This comprehensive data flow documentation provides the foundation for understanding how information moves through the Gemini MCP Server, enabling effective debugging, optimization, and extension of the system.

3
docs/architecture/overview.md
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@@ -222,4 +222,5 @@ class ThreadContext:
---
This architecture provides a robust, secure, and extensible foundation for AI-assisted development workflows while maintaining clear separation of concerns and comprehensive error handling.
This architecture provides a robust, secure, and extensible foundation for AI-assisted development workflows while maintaining clear separation of concerns and comprehensive error handling.

3
docs/contributing/code-style.md
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@@ -599,4 +599,5 @@ repos:
---
Following these code style guidelines ensures consistent, maintainable, and secure code across the Gemini MCP Server project. All team members should adhere to these standards and use the automated tools to enforce compliance.
Following these code style guidelines ensures consistent, maintainable, and secure code across the Gemini MCP Server project. All team members should adhere to these standards and use the automated tools to enforce compliance.

5
docs/contributing/file-overview.md
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@@ -7,7 +7,7 @@ This document provides a comprehensive guide to the repository structure, explai
## Repository Structure
```
gemini-mcp-server/
zen-mcp-server/
├── CLAUDE.md # Collaboration framework and development guidelines
├── README.md # Project overview and quick start guide
├── LICENSE # Project license (MIT)
@@ -379,4 +379,5 @@ tests/
---
This file overview provides the foundation for understanding the repository structure and serves as a guide for contributors to navigate the codebase effectively and make informed architectural decisions.
This file overview provides the foundation for understanding the repository structure and serves as a guide for contributors to navigate the codebase effectively and make informed architectural decisions.

7
docs/contributing/setup.md
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@@ -21,8 +21,8 @@ This guide helps you set up a development environment for contributing to the Ge
### 1. Clone Repository
```bash
git clone https://github.com/BeehiveInnovations/gemini-mcp-server.git
cd gemini-mcp-server
git clone https://github.com/BeehiveInnovations/zen-mcp-server.git
cd zen-mcp-server
```
### 2. Choose Development Method
@@ -377,4 +377,5 @@ docker system prune -f
**Next Steps:**
- Read [Development Workflows](workflows.md)
- Review [Code Style Guide](code-style.md)
- Understand [Testing Strategy](testing.md)
- Understand [Testing Strategy](testing.md)

3
docs/contributing/test-structure.md
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@@ -467,4 +467,5 @@ Clear organization and focused test files for easy maintenance
---
This test structure demonstrates a mature, production-ready testing approach that ensures code quality, security, and reliability while supporting the collaborative AI development patterns that make this project unique.
This test structure demonstrates a mature, production-ready testing approach that ensures code quality, security, and reliability while supporting the collaborative AI development patterns that make this project unique.

3
docs/contributing/testing.md
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@@ -687,4 +687,5 @@ For a comprehensive analysis of the existing test suite, including detailed brea
---
This comprehensive testing strategy ensures high-quality, reliable code while maintaining development velocity and supporting the collaborative patterns defined in CLAUDE.md.
This comprehensive testing strategy ensures high-quality, reliable code while maintaining development velocity and supporting the collaborative patterns defined in CLAUDE.md.

7
docs/contributing/workflows.md
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@@ -573,8 +573,8 @@ claude-code-cli --tool precommit --path /workspace/
**Docker Image Workflow**:
```bash
# 1. Build and test image locally
docker build -t gemini-mcp-server:latest .
docker run --rm gemini-mcp-server:latest --version
docker build -t zen-mcp-server:latest .
docker run --rm zen-mcp-server:latest --version
# 2. Push to registry (automated via GitHub Actions)
# 3. Update deployment configurations
@@ -619,4 +619,5 @@ Implementation: Added context managers and explicit cleanup in utils/conversatio
---
This development workflow ensures high-quality, collaborative development while maintaining consistency with CLAUDE.md patterns and preserving knowledge through the Memory Bank system.
This development workflow ensures high-quality, collaborative development while maintaining consistency with CLAUDE.md patterns and preserving knowledge through the Memory Bank system.

13
docs/user-guides/configuration.md
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@@ -8,7 +8,7 @@ This guide covers all configuration options for the Gemini MCP Server.
| Variable | Description | Example |
|----------|-------------|---------|
| `GEMINI_API_KEY` | Your Gemini API key from Google AI Studio | `AIzaSyC...` |
| `GEMINI_API_KEY` | Your Gemini API key from Google AI Studio (replace entire placeholder) | `AIzaSyC_your_actual_key_here` |
### Optional Configuration
@@ -43,10 +43,10 @@ Add to your Claude Desktop config file:
"args": [
"run", "--rm", "-i",
"-e", "GEMINI_API_KEY",
"ghcr.io/patrykiti/gemini-mcp-server:latest"
"ghcr.io/beehiveinnovations/zen-mcp-server:latest"
],
"env": {
"GEMINI_API_KEY": "your-gemini-api-key-here"
"GEMINI_API_KEY": "AIzaSyC_your_actual_gemini_api_key_here"
}
}
}
@@ -75,10 +75,10 @@ Add to your Claude Desktop config file:
"args": [
"run", "--rm", "-i",
"-e", "GEMINI_API_KEY",
"ghcr.io/patrykiti/gemini-mcp-server:v1.2.0"
"ghcr.io/beehiveinnovations/zen-mcp-server:v1.2.0"
],
"env": {
"GEMINI_API_KEY": "your-gemini-api-key-here"
"GEMINI_API_KEY": "AIzaSyC_your_actual_gemini_api_key_here"
}
}
}
@@ -288,4 +288,5 @@ services:
**See Also:**
- [Installation Guide](installation.md)
- [Troubleshooting Guide](troubleshooting.md)
- [Troubleshooting Guide](troubleshooting.md)

8
docs/user-guides/contributing-guide.md
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@@ -108,13 +108,13 @@ After your PR is merged with a `+docker` prefix:
```bash
# Pull your test image
docker pull ghcr.io/patrykiti/gemini-mcp-server:pr-42
docker pull ghcr.io/beehiveinnovations/zen-mcp-server:pr-42
# Or use the commit-based tag
docker pull ghcr.io/patrykiti/gemini-mcp-server:main-abc1234
docker pull ghcr.io/beehiveinnovations/zen-mcp-server:main-abc1234
# Test it locally
docker run -it --rm ghcr.io/patrykiti/gemini-mcp-server:pr-42
docker run -it --rm ghcr.io/beehiveinnovations/zen-mcp-server:pr-42
```
## Workflow Summary
@@ -178,4 +178,4 @@ Before submitting a PR:
- **Questions about automation?** Open a discussion or ask in your PR comments
- **Need API access for testing?** Live integration tests are optional for contributors
Remember: The automation is designed to help maintain consistency and quality. When in doubt, choose the most conservative prefix and ask for guidance in your PR!
Remember: The automation is designed to help maintain consistency and quality. When in doubt, choose the most conservative prefix and ask for guidance in your PR!

24
docs/user-guides/installation.md
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@@ -45,10 +45,10 @@ After following this guide, you'll have:
```bash
# Download the latest stable version
docker pull ghcr.io/patrykiti/gemini-mcp-server:latest
docker pull ghcr.io/beehiveinnovations/zen-mcp-server:latest
# Optional: Pull a specific version
docker pull ghcr.io/patrykiti/gemini-mcp-server:v1.2.0
docker pull ghcr.io/beehiveinnovations/zen-mcp-server:v1.2.0
```
### Step 2: Configure Claude Desktop
@@ -66,7 +66,7 @@ docker pull ghcr.io/patrykiti/gemini-mcp-server:v1.2.0
"args": [
"run", "--rm", "-i",
"-e", "GEMINI_API_KEY",
"ghcr.io/patrykiti/gemini-mcp-server:latest"
"ghcr.io/beehiveinnovations/zen-mcp-server:latest"
],
"env": {
"GEMINI_API_KEY": "your-gemini-api-key-here"
@@ -86,10 +86,10 @@ Available image tags:
```bash
# See all available tags
docker search ghcr.io/patrykiti/gemini-mcp-server
docker search ghcr.io/beehiveinnovations/zen-mcp-server
# Or check GitHub Container Registry
open https://github.com/PatrykIti/gemini-mcp-server/pkgs/container/gemini-mcp-server
open https://github.com/BeehiveInnovations/zen-mcp-server/pkgs/container/zen-mcp-server
```
### Step 4: Test Installation
@@ -113,8 +113,8 @@ Restart Claude Desktop and try:
### Step 1: Clone Repository
```bash
git clone https://github.com/BeehiveInnovations/gemini-mcp-server.git
cd gemini-mcp-server
git clone https://github.com/BeehiveInnovations/zen-mcp-server.git
cd zen-mcp-server
```
### Step 2: One-Command Setup
@@ -198,7 +198,7 @@ services:
- redis_data:/data
gemini-mcp:
image: ghcr.io/beehiveinnovations/gemini-mcp-server:latest
image: ghcr.io/beehiveinnovations/zen-mcp-server:latest
container_name: gemini-mcp-server
restart: unless-stopped
depends_on:
@@ -383,8 +383,8 @@ Once you're set up:
1. **Explore the tools**: Try each tool to understand their specialties
2. **Read the main README**: [Full documentation](../README.md) has advanced usage patterns
3. **Join discussions**: [GitHub Discussions](https://github.com/BeehiveInnovations/gemini-mcp-server/discussions) for tips and tricks
4. **Contribute**: Found a bug or want a feature? [Open an issue](https://github.com/BeehiveInnovations/gemini-mcp-server/issues)
3. **Join discussions**: [GitHub Discussions](https://github.com/BeehiveInnovations/zen-mcp-server/discussions) for tips and tricks
4. **Contribute**: Found a bug or want a feature? [Open an issue](https://github.com/BeehiveInnovations/zen-mcp-server/issues)
## 💡 Pro Tips
@@ -402,5 +402,5 @@ Once you're set up:
**Need Help?**
- 📖 [Full Documentation](../README.md)
- 💬 [Community Discussions](https://github.com/BeehiveInnovations/gemini-mcp-server/discussions)
- 🐛 [Report Issues](https://github.com/BeehiveInnovations/gemini-mcp-server/issues)
- 💬 [Community Discussions](https://github.com/BeehiveInnovations/zen-mcp-server/discussions)
- 🐛 [Report Issues](https://github.com/BeehiveInnovations/zen-mcp-server/issues)

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docs/user-guides/troubleshooting.md
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@@ -393,8 +393,8 @@ cat .env | grep -v "GEMINI_API_KEY"
### Support Channels
- 📖 [Documentation](../README.md)
- 💬 [GitHub Discussions](https://github.com/BeehiveInnovations/gemini-mcp-server/discussions)
- 🐛 [Issue Tracker](https://github.com/BeehiveInnovations/gemini-mcp-server/issues)
- 💬 [GitHub Discussions](https://github.com/BeehiveInnovations/zen-mcp-server/discussions)
- 🐛 [Issue Tracker](https://github.com/BeehiveInnovations/zen-mcp-server/issues)
### Creating Bug Reports
@@ -409,4 +409,4 @@ Include in your bug report:
**See Also:**
- [Installation Guide](installation.md)
- [Configuration Guide](configuration.md)
- [Configuration Guide](configuration.md)