Easier access to logs at startup with -f on the run script

Improved prompt for immediate action
Additional logging of tool names
Updated documentation
Context aware decomposition system prompt
New script to run code quality checks

tests/test_testgen.py

@@ -284,7 +284,7 @@ class TestComprehensive(unittest.TestCase):
 
         # Check formatting includes new action-oriented next steps
         assert raw_response in formatted
-        assert "IMMEDIATE NEXT ACTION" in formatted
+        assert "EXECUTION MODE" in formatted
         assert "ULTRATHINK" in formatted
         assert "CREATE" in formatted
         assert "VALIDATE BY EXECUTION" in formatted