Fixed workspace path mapping

Refactoring
Improved system prompts, more generalized
Home folder protection and detection
Retry logic for gemini

docs/logging.md

@@ -0,0 +1,43 @@
+# Logging
+
+## Viewing Logs in Docker
+
+To monitor MCP server activity in real-time:
+
+```bash
+# View all container logs
+docker-compose logs -f
+```
+
+## Log Files
+
+Logs are stored in the container's `/tmp/` directory and rotate daily at midnight, keeping 7 days of history:
+
+- **`mcp_server.log`** - Main server operations
+- **`mcp_activity.log`** - Tool calls and conversations
+- **`mcp_server_overflow.log`** - Overflow protection for large logs
+
+## Accessing Log Files
+
+To access log files directly:
+
+```bash
+# Enter the container
+docker exec -it zen-mcp-server /bin/sh
+
+# View current logs
+cat /tmp/mcp_server.log
+cat /tmp/mcp_activity.log
+
+# View previous days (with date suffix)
+cat /tmp/mcp_server.log.2024-06-14
+```
+
+## Log Level
+
+Set verbosity with `LOG_LEVEL` in your `.env` file or docker-compose.yml:
+
+```yaml
+environment:
+  - LOG_LEVEL=DEBUG  # Options: DEBUG, INFO, WARNING, ERROR
+```