🚀 Major Enhancement: Workflow-Based Tool Architecture v5.5.0 (#95)

* WIP: new workflow architecture

* WIP: further improvements and cleanup

* WIP: cleanup and docks, replace old tool with new

* WIP: cleanup and docks, replace old tool with new

* WIP: new planner implementation using workflow

* WIP: precommit tool working as a workflow instead of a basic tool
Support for passing False to use_assistant_model to skip external models completely and use Claude only

* WIP: precommit workflow version swapped with old

* WIP: codereview

* WIP: replaced codereview

* WIP: replaced codereview

* WIP: replaced refactor

* WIP: workflow for thinkdeep

* WIP: ensure files get embedded correctly

* WIP: thinkdeep replaced with workflow version

* WIP: improved messaging when an external model's response is received

* WIP: analyze tool swapped

* WIP: updated tests
* Extract only the content when building history
* Use "relevant_files" for workflow tools only

* WIP: updated tests
* Extract only the content when building history
* Use "relevant_files" for workflow tools only

* WIP: fixed get_completion_next_steps_message missing param

* Fixed tests
Request for files consistently

* Fixed tests
Request for files consistently

* Fixed tests

* New testgen workflow tool
Updated docs

* Swap testgen workflow

* Fix CI test failures by excluding API-dependent tests

- Update GitHub Actions workflow to exclude simulation tests that require API keys
- Fix collaboration tests to properly mock workflow tool expert analysis calls
- Update test assertions to handle new workflow tool response format
- Ensure unit tests run without external API dependencies in CI

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* WIP - Update tests to match new tools

* WIP - Update tests to match new tools

---------

Co-authored-by: Claude <noreply@anthropic.com>

tests/test_conversation_memory.py

@@ -507,7 +507,7 @@ class TestConversationFlow:
         mock_storage.return_value = mock_client
 
         # Start conversation with files
-        thread_id = create_thread("analyze", {"prompt": "Analyze this codebase", "files": ["/project/src/"]})
+        thread_id = create_thread("analyze", {"prompt": "Analyze this codebase", "relevant_files": ["/project/src/"]})
 
         # Turn 1: Claude provides context with multiple files
         initial_context = ThreadContext(
@@ -516,7 +516,7 @@ class TestConversationFlow:
             last_updated_at="2023-01-01T00:00:00Z",
             tool_name="analyze",
             turns=[],
-            initial_context={"prompt": "Analyze this codebase", "files": ["/project/src/"]},
+            initial_context={"prompt": "Analyze this codebase", "relevant_files": ["/project/src/"]},
         )
         mock_client.get.return_value = initial_context.model_dump_json()
 
@@ -545,7 +545,7 @@ class TestConversationFlow:
                     tool_name="analyze",
                 )
             ],
-            initial_context={"prompt": "Analyze this codebase", "files": ["/project/src/"]},
+            initial_context={"prompt": "Analyze this codebase", "relevant_files": ["/project/src/"]},
         )
         mock_client.get.return_value = context_turn_1.model_dump_json()
 
@@ -576,7 +576,7 @@ class TestConversationFlow:
                     files=["/project/tests/", "/project/test_main.py"],
                 ),
             ],
-            initial_context={"prompt": "Analyze this codebase", "files": ["/project/src/"]},
+            initial_context={"prompt": "Analyze this codebase", "relevant_files": ["/project/src/"]},
         )
         mock_client.get.return_value = context_turn_2.model_dump_json()
 
@@ -617,7 +617,7 @@ class TestConversationFlow:
                     tool_name="analyze",
                 ),
             ],
-            initial_context={"prompt": "Analyze this codebase", "files": ["/project/src/"]},
+            initial_context={"prompt": "Analyze this codebase", "relevant_files": ["/project/src/"]},
         )
 
         history, tokens = build_conversation_history(final_context)