Migration from Docker to Standalone Python Server (#73)

* Migration from docker to standalone server
Migration handling
Fixed tests
Use simpler in-memory storage
Support for concurrent logging to disk
Simplified direct connections to localhost

* Migration from docker / redis to standalone script
Updated tests
Updated run script
Fixed requirements
Use dotenv
Ask if user would like to install MCP in Claude Desktop once
Updated docs

* More cleanup and references to docker removed

* Cleanup

* Comments

* Fixed tests

* Fix GitHub Actions workflow for standalone Python architecture

- Install requirements-dev.txt for pytest and testing dependencies
- Remove Docker setup from simulation tests (now standalone)
- Simplify linting job to use requirements-dev.txt
- Update simulation tests to run directly without Docker

Fixes unit test failures in CI due to missing pytest dependency.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Remove simulation tests from GitHub Actions

- Removed simulation-tests job that makes real API calls
- Keep only unit tests (mocked, no API costs) and linting
- Simulation tests should be run manually with real API keys
- Reduces CI costs and complexity

GitHub Actions now only runs:
- Unit tests (569 tests, all mocked)
- Code quality checks (ruff, black)

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Fixed tests

* Fixed tests

---------

Co-authored-by: Claude <noreply@anthropic.com>

simulator_tests/test_conversation_chain_validation.py

@@ -21,8 +21,6 @@ This validates the conversation threading system's ability to:
 - Properly traverse parent relationships for history reconstruction
 """
 
-import re
-import subprocess
 
 from .base_test import BaseSimulatorTest
 
@@ -38,53 +36,6 @@ class ConversationChainValidationTest(BaseSimulatorTest):
     def test_description(self) -> str:
         return "Conversation chain and threading validation"
 
-    def get_recent_server_logs(self) -> str:
-        """Get recent server logs from the log file directly"""
-        try:
-            cmd = ["docker", "exec", self.container_name, "tail", "-n", "500", "/tmp/mcp_server.log"]
-            result = subprocess.run(cmd, capture_output=True, text=True)
-
-            if result.returncode == 0:
-                return result.stdout
-            else:
-                self.logger.warning(f"Failed to read server logs: {result.stderr}")
-                return ""
-        except Exception as e:
-            self.logger.error(f"Failed to get server logs: {e}")
-            return ""
-
-    def extract_thread_creation_logs(self, logs: str) -> list[dict[str, str]]:
-        """Extract thread creation logs with parent relationships"""
-        thread_logs = []
-
-        lines = logs.split("\n")
-        for line in lines:
-            if "[THREAD] Created new thread" in line:
-                # Parse: [THREAD] Created new thread 9dc779eb-645f-4850-9659-34c0e6978d73 with parent a0ce754d-c995-4b3e-9103-88af429455aa
-                match = re.search(r"\[THREAD\] Created new thread ([a-f0-9-]+) with parent ([a-f0-9-]+|None)", line)
-                if match:
-                    thread_id = match.group(1)
-                    parent_id = match.group(2) if match.group(2) != "None" else None
-                    thread_logs.append({"thread_id": thread_id, "parent_id": parent_id, "log_line": line})
-
-        return thread_logs
-
-    def extract_history_traversal_logs(self, logs: str) -> list[dict[str, str]]:
-        """Extract conversation history traversal logs"""
-        traversal_logs = []
-
-        lines = logs.split("\n")
-        for line in lines:
-            if "[THREAD] Retrieved chain of" in line:
-                # Parse: [THREAD] Retrieved chain of 3 threads for 9dc779eb-645f-4850-9659-34c0e6978d73
-                match = re.search(r"\[THREAD\] Retrieved chain of (\d+) threads for ([a-f0-9-]+)", line)
-                if match:
-                    chain_length = int(match.group(1))
-                    thread_id = match.group(2)
-                    traversal_logs.append({"thread_id": thread_id, "chain_length": chain_length, "log_line": line})
-
-        return traversal_logs
-
     def run_test(self) -> bool:
         """Test conversation chain and threading functionality"""
         try: