Migration from Docker to Standalone Python Server (#73)

* Migration from docker to standalone server
Migration handling
Fixed tests
Use simpler in-memory storage
Support for concurrent logging to disk
Simplified direct connections to localhost

* Migration from docker / redis to standalone script
Updated tests
Updated run script
Fixed requirements
Use dotenv
Ask if user would like to install MCP in Claude Desktop once
Updated docs

* More cleanup and references to docker removed

* Cleanup

* Comments

* Fixed tests

* Fix GitHub Actions workflow for standalone Python architecture

- Install requirements-dev.txt for pytest and testing dependencies
- Remove Docker setup from simulation tests (now standalone)
- Simplify linting job to use requirements-dev.txt
- Update simulation tests to run directly without Docker

Fixes unit test failures in CI due to missing pytest dependency.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Remove simulation tests from GitHub Actions

- Removed simulation-tests job that makes real API calls
- Keep only unit tests (mocked, no API costs) and linting
- Simulation tests should be run manually with real API keys
- Reduces CI costs and complexity

GitHub Actions now only runs:
- Unit tests (569 tests, all mocked)
- Code quality checks (ruff, black)

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

* Fixed tests

* Fixed tests

---------

Co-authored-by: Claude <noreply@anthropic.com>

.github/ISSUE_TEMPLATE/documentation.yml

@@ -33,7 +33,7 @@ body:
     attributes:
       label: What is wrong with the documentation?
       description: "Please describe the problem. Be specific about what is unclear, incorrect, or missing."
-      placeholder: "The Docker setup command in the README is missing the `--pull=always` flag, which means users might use an outdated image version."
+      placeholder: "README is missing some details"
     validations:
       required: true
 
@@ -42,16 +42,8 @@ body:
     attributes:
       label: Suggested Improvement
       description: "How can we make it better? If you can, please provide the exact text or changes you'd like to see."
-      placeholder: |
-        Change:
-        ```
-        docker run ghcr.io/beehiveinnovations/zen-mcp-server:latest
-        ```
-        
-        To:
-        ```
-        docker run --pull=always ghcr.io/beehiveinnovations/zen-mcp-server:latest
-        ```
+      placeholder: "Please improve...."
+
 
   - type: dropdown
     id: audience